PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058355001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 104aa    MW: 11150.8 Da    PI: 8.1306
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058355001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601192.8e-3715102187
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                          +C aCk+lrrkC +dC++apyf +eq +++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar++dPvyG+v++i++lqqq+
  GSBRNA2T00058355001  15 PCGACKFLRRKCLSDCIFAPYFSSEQgAERFAAIHKVFGASNVSKLLLKVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFSLQQQV 102
                          7***********************9989***********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.99814103IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3615102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MATSGNITTA GTGSPCGACK FLRRKCLSDC IFAPYFSSEQ GAERFAAIHK VFGASNVSKL  60
LLKVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFSLQQ QVD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058355001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411041e-174AC241104.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH017L09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623983.12e-72PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB75e-68LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A0D3B6C52e-72A0A0D3B6C5_BRAOL; Uncharacterized protein
STRINGBra000257.1-P2e-70(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.13e-69lateral organ boundaries-domain 16